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Publications arising from Exchange Grants awarded through Integrated Approaches on Functional Genomics and Frontiers of Functional Genomics

If you have a publication to add to this list of 70 papers, please contact us with the details.

Juhila et al, 2011, PLoS MicroRNA expression profiling reveals miRNA families regulating specific biological pathways in mouse frontal cortex and hippocampus link
Huerta-Cepas et al, 2011, Brief Bioinform Evidence for short-time divergence and long-time conservation of tissue-specific expression after gene duplication link
Kamali-Moghaddam et al, 2010, BMC Neuroscience Sensitive detection of Aß protofibrils by proximity ligation - relevance for Alzheimer's disease link
Nikopensius et al, 2010, Eur J Oral Sci Susceptibility locus for non-syndromic cleft lip with or without cleft palate on chromosome 10q25 confers risk in Estonian patients link
Novoyatleva et al, 2010, Cardiovasc Res TWEAK is a positive regulator of cardiomyocyte proliferation link
Pandini et al, 2010 BMC Bioinformatics Structural alphabets derived from attractors in conformational space link
Rattei et al, 2010, Nucleic Acid Res SIMAP--a comprehensive database of pre-calculated protein sequence similarities, domains, annotations and clusters link
Zieba et al, 2010, Clin Chem Bright-field microscopy visualization of proteins and protein complexes by in situ proximity ligation with peroxidase detection link
Antezana et al, 2009, BMC Bioinformatics BioGateway: a semantic systems biology tool for the life sciences link
Antezana et al, 2009, Genome Biol The Cell Cycle Ontology: an application ontology for the representation and integrated analysis of the cell cycle process link
Cangul et al, 2009, Turk J Pediatr Pantothenate kinase-associated neurodegeneration (PKAN): molecular confirmation of a Turkish patient with a rare frameshift mutation in the coding region of the PANK2 gene link
Gloriam et al, 2009, Mol Cell Proteomics Report: A community standard format for the representation of protein affinity reagents link
Halyvati et al, 2009, Eur Biophys J A Mathematical Model of Actin Filament Turnover for Fitting FRAP Data link
Halyvati et al, 2009, Biophys Chem An integrative simulation model linking major biochemical reactions of actin-polymerization to structural properties of actin filaments link
Hartmann et al, 2009, Anal Bioanal Chem Non-contact protein microarray fabrication using a procedure based on liquid bridge formation link
Murn et al, 2009, BMC Genomics A Myc-regulated transcriptional network controls B-cell fate in response to BCR triggering link
Nikopensius et al, 2009, Am J Med Genet A Replication of novel susceptibility locus for nonsyndromic cleft lip with or without cleft palate on chromosome 8q24 in Estonian and Lithuanian patients link
Orchard et al, 2009, Proteomics Annual spring meeting of the Proteomics Standards Initiative link
Vaquerizas et al, 2009, Nat Rev Genet A census of human transcription factors: function, expression and evolution link
Antezana et al, 2008, CEUR Workshop Proceedings Structuring the Life Science Resourceome for Semantic Systems Biology: Lessons from the BioGateway Project
link
Egaña et al, 2008, OWLED Workshop Transforming the Axiomisation of Ontologies: The Ontology Pre-Processor Language link
Egaña et al, 2008, Lecture Notes in Cumputer Science Applying Ontology Design Patterns in Bio-ontologies (book chapter) link
Rogers et al, 2008, PNAS Molecular and cellular components of the mating machinery in Anopheles gambiae females link
Vaquerizas et al, 2008, Cell Genome-wide analysis reveals MOF as a key regulator of dosage compensation and gene expression in Drosophila link
Zou et al, 2008, Mol Immunol Removal of the BiP-retention domain in Cmicro permits surface deposition and developmental progression without L-chain link
Admyre et al, 2007, J Immunol Exosomes with immune modulatory features are present in human breast milk link
Corcos et al, 2007,
Arch Immunol Ther Exp
Ligand-independent activity of the B cell antigen receptor in physiology and pathology link
Halada et al, 2007, Proteomics A proteomic approach to studying the differentiation of neural stem cells link
Hebbeln et al, 2007,
PNAS
Biotin uptake in prokaryotes by solute transporters with an optional ATP-binding cassette-containing module link
Zou et al, 2007, J Exp Med Heavy chain-only antibodies are spontaneously produced in light chain-deficient mice link
Bastard et al, 2006, Proteins Accounting for loop flexibility during protein-protein docking link
Branche et al, 2006,
J Cell Sci
Conserved and specific functions of axoneme components in trypanosome motility link
Bruggemann et al, 2006, Crit Rev Immunol Heavy-chain-only antibody expression and B-cell development in the mouse link
Ciullo et al, 2006, Hum Mol Genet New susceptibility locus for hypertension on chromosome 8q by efficient pedigree-breaking in an Italian isolate link
Codoner et al, 2006,
J Virol
Adaptive covariation between the coat and movement proteins of prunus necrotic ringspot virus link
De Bodt et al, 2006,
Mol Biol Evol
Promoter analysis of MADS-box genes in eudicots through phylogenetic footprinting link
Drew et al, 2006,
Nat Methods
Optimization of membrane protein overexpression and purification using GFP fusions link
Gonzalez-Neira et al, 2006,
Genome Res
The portability of tagSNPs across populations: a worldwide survey link
Kohler et al, 2006,
Bioinformatics
Graph-based analysis and visualization of experimental results with ONDEX link
Nieto et al, 2006,
Plant J
An eIF4E allele confers resistance to an uncapped and non-polyadenylated RNA virus in melon link
Ozbas-Gerceker et al, 2006,
Neuroscience
Serial analysis of gene expression in the hippocampus of patients with mesial temporal lobe epilepsy link
Peinado et al, 2006, Gen Comp
Endocrinol
RT-PCR analysis of the expression of POMC and its processing enzyme PC1 in amphibian melanotropes link
Peinado et al, 2006, Endocrinology Differential expression and processing of chromogranin A and secretogranin II in relation to the secretory status of endocrine cells link
Philippi & Kohler, 2006,
Nat Rev Gen
Addressing the problems with life-science databases for traditional uses and systems biology link
Rodionov et al, 2006,
J Bacteriol
Comparative and functional genomic analysis of prokaryotic nickel and cobalt uptake transporters: evidence for a novel group of ATP-binding cassette transporters link
Saarela et al, 2006,
PLoS Genet
PRKCA and multiple sclerosis: association in two independent populations link
de Torres et al, 2006,
Plant J
Pseudomonas syringae effector AvrPtoB suppresses basal defence in Arabidopsis link
Dimitrova et al, 2005,
Pharmacogenom J
Association study of myo-inositol monophosphatase 2 (IMPA2) polymorphisms with bipolar affective disorder and response to lithium treatment link
Dorn et al, 2005,
J Virol
Identification of specific cellular genes up-regulated late in adenovirus type 12 infection link
Drew et al, 2005,
Protein Sci
A scalable, GFP-based pipeline for membrane protein overexpression screening and purification link
Jansa et al, 2005,
BMC Genomics
Construction and characterization of a genomic BAC library for the Mus m. musculus mouse subspecies (PWD/Ph inbred strain). link
Kosinski et al, 2005,
J Mol Biol
Analysis of the quaternary structure of the MutL C-terminal domain link
Malagon et al, 2005,
Ann NY Acad Sci
Analysis of Rab18 and a new golgin in the secretory pathway link
Maurer et al, 2005,
BMC Bioinformatics
MARS: microarray analysis, retrieval, and storage system link
Morales et al, 2005,
Theor Appl Genet
A physical map covering the nsv locus that confers resistance to Melon necrotic spot virus in melon (Cucumis melo L.) link
Pages et al, 2005,
N Engl J Med
Effector memory T cells, early metastasis, and survival in colorectal cancer link
Polzikov et al, 2005, Biochem Biophys Res Commun
Identification of an evolutionary conserved SURF-6 domain in a family of nucleolar proteins extending from human to yeast link
Skusa et al, 2005,
Brief Bioinform
Extraction of biological interaction networks from scientific literature link
Sturn et al, 2005,
Methods Mol Biol
Systems for the management of pharmacogenomic information link
Vazquez-Martinez et al, 2005,
J Endocrinol Invest
Melanotrope cells as a model to understand the (patho)physiological regulation of hormone secretion link
Vigo et al, 2005,
Mol Cell Neurosci
Experimental Charcot-Marie-Tooth type 1A: a cDNA microarrays analysis link
Aguilar et al, 2004,
J Mol Biol
Analysis of phenetic trees based on metabolic capabilites across the three domains of life link
Chabelskaya et al, 2004, Mol Genet Genomics Nonsense mutations in the essential gene SUP35 of Saccharomyces cerevisiae are non-lethal link
Ozbas-Gerceker et al, 2004, Neuropathol Appl Neurobiol Neurotrophin receptor immunoreactivity in the hippocampus of patients with mesial temporal lobe epilepsy link
Vondruskova et al, 2004, J Biol Chem RNA interference analyses suggest a transcript-specific regulatory role for mitochondrial RNA-binding proteins MRP1 and MRP2 in RNA editing and other RNA processing in Trypanosoma brucei link

Kirov et al, 2003,
Am J Med Genet

Association analysis of the HOPA12bp polymorphism in schizophrenia and manic depressive illness link
Slominska et al, 2003, Biochem J Degradation of mutant initiator protein DnaA204 by proteases ClpP, ClpQ and Lon is prevented when DNA is SeqA-free link
Peinado et al, 2002,
Gen Comp Endocrinol
Amphibian melanotrophs as a model to analyze the secretory plasticity of endocrine cells link
Vazquez-Martinez et al, 2001, Endocrinology Melanotrope cell plasticity: a key mechanism for the physiological adaptation to background color changes link
Slominska et al, 2001, Mol Microbiol SeqA, the Escherichia coli origin sequestration protein, is also a specific transcription factor link