Databases and Resources

Genomic Databases

Genbank
EMBL
The Institute for Genomic Resource (TIGR)
SwissProt
Munich Information Center for Protein Sequences
DNA Data Bank of Japan

Sequencing updates

GOLD Genomes OnLine Database
Completely Sequenced Genomes

Bioinformatics Centres

European Bioinformatics Institute (EBI)
Swiss Institute of Bioinformatics (SIB)
The Sanger Centre
PBIL (France)
Bibiserv (Germany)
The Bioinformatics Resource (CCP11)
Computational Biology Research Group (Zurich)
Bioplanet (Resource Centre)
Databases and Analysis Collection Links (Cambridge)

Protein-protein interactions

Protein Interaction Maps
Molecular Interctions Database (MINT)
Database of Interacting Proteins (DIP)
Proteomics Portal

SNPs

Human SNP Database
dbSNP
HGVbase
Human Chromosome 21 cSNP Database and MAP
IMS-JSP SNPs Database
The SNP Consortium Ltd
Mass Array SNP Database
Leelab SNP Database

Structural genomics

European Macromolecular Crystallography Infrastructure Cooperation Network
Protein Information Resource
Protein Structure Initiative
Structure 2 Function Project
Presage Structural Genomics Database
Joint Center for Structural Genomics
Protein Databank
Database of comparative protein structure models
BioResMagBank
Structural Biology Industrial Platform
CATH - Protein Structure Classification
Dali Server - Network service for comparing protein structures in 3D
SCOP - Structural Classification of Proteins
PredictProtein Server
Protein Fold Recognition Server
Protein Structure Analysis Tool (PROSA II)
Threading a sequence through a set of structures
New Jersey Initiative in Structural Genomics and
Bioinformatics (NJISGB)

Mycobacterium tuberculosis Structural Genomics

Plant Resources

The Arabidopsis Information Resource
TIGR Arabidopsis thaliana Database
MATDB at MIPS
Arabidopsis Biological Resource Center (ABRC)
Nottingham Arabidopsis Stock Center
Rice Genome Research Programme
TIGR Rice Database
Maize Genome Database
Medicago truncatula Root EST Database
TIGR - NSF Potato Functional Genomics
UK CropNet
Genome Arabidopsis Network (GARNET)
Genomanalyse im Biologischen System Pflanze (GABI)
INRA plant databases

NSF project Maize Gene Discovery

Microbial Resources

TIGR Microbial Database
Microbial Genome Database
World Data Centre for microorganisms (WDCM)
Genamics - access to current/completed microbial genome projects
WIT - metabolic reconstructions
Microbial Strain Data Network

Kyoto Encyclopedia of Genes and Genomes (KEGG)

Yeast Resources

The Yeast Genome at MIPS
Saccharomyces Genome Database
The Promoter Database of Saccharomyces cerevisiae
Small Nucleolar RNAs (snoRNAs) from the Yeast S. cerevisiae
Saccharomyces cerevisiae Methylation Guide snoRNAs
Sacchdb - Saccharomyces cerevisiae ACeDB style database
PomBase - S. pombe ACeDB style database
Sacch3D: Structural Information for Yeast Proteins
TRIPLES: TRansposon-Insertion Phenotypes, Localization, and Expression in Saccharomyces
The entire tRNA gene set of yeast Saccharomyces cerevisiae
Proteome Database
Yeast Protein Function Assignment
Saccharomyces Genome Deletion Project

General Resources

ExPASY
EMBNet

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