Protein Array References
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Selected literature dealing with aspects of design and applications of protein arrays
(URLs for abstracts are provided).

indicates an addition in the most recent page update (July 2009)

Original Papers

Reviews

Original papers

2009

Gnjatic S, Wheeler C, Ebner M et al. (2009) Seromic analysis of antibody responses in non-small cell lung cancer patients and healthy donors using conformational protein arrays. J. Immunol. Methods 28;341(1-2):50-8

Kijanka G, Ipcho S, Baars S et al. (2009) Rapid characterization of binding specificity and cross-reactivity of antibodies using recombinant human protein arrays. J. Immunol. Methods 340(2),132-137

Stansfield HE, Kulczewski BP, Lybrand KE, Jamieson ER. (2009) Identifying protein interactions with metal-modified DNA using microarray technology. J. Biol. Inorg. Chem

Hartmann M, Sjodahl J, Stjernstrom M, Redeby J, Joos T, Roeraade J. (2009) Non-contact protein microarray fabrication using a procedure based on liquid bridge formation. Anal. Bioanal. Chem

2008

Anderson KS , Ramachandran N, Wong J et al. (2008) Application of protein microarrays for multiplexed detection of antibodies to tumor antigens in breast cancer. J. Proteome Res. 7(4), 1490-1499

Björling E , Uhlen M. (2008) Antibodypedia, a portal for sharing antibody and antigen validation data. Mol. Cell. Proteomics 7(10), 2028-2037

Boyd ZS, Wu QJ, O'Brien C et al. (2008) Proteomic analysis of breast cancer molecular subtypes and biomarkers of response to targeted kinase inhibitors using reverse-phase protein microarrays. Mol. Cancer Ther. 7(12):3695-706

Chaga GS. (2008) Antibody arrays for determination of relative protein abundances. Methods Mol. Biol. 441, 129-151

Chen Z, Tabakman SM, Goodwin AP et al. (2008) Protein microarrays with carbon nanotubes as multicolor Raman labels. Nat. Biotechnol. 26(11), 1285-1292

Doolan DL, Mu Y, Unal B et al. (2008) Profiling humoral immune responses to P. falciparum infection with protein microarrays. Proteomics 8(22), 4680-4694

Goshima N, Kawamura Y, Fukumoto A et al (2008) Human protein factory for converting the transcriptome into an in vitro -expressed proteome. Nat. Methods 5(12), 1011-1017

Graslund S, Nordlund P, Weigelt J et al (2008) Protein production and purification. Nat Methods 5(2), 135-146

He M, Stoevesandt O, Palmer EA, Khan F, Ericsson O, Taussig MJ. (2008) Printing protein arrays from DNA arrays. Nat Methods 5(2), 175-177

Ingvarsson J, Wingren C, Carlsson A et al. (2008) Detection of pancreatic cancer using antibody microarray-based serum protein profiling. Proteomics 8(11), 2211-2219

Ji J, O'Connell JG, Carter DJ, Larson DN. (2008) High-throughput nanohole array based system to monitor multiple binding events in real time. Anal. Chem 80(7), 2491-2498

Korf U, Derdak S, Tresch A et al. (2008) Quantitative protein microarrays for time-resolved measurements of protein phosphorylation. Proteomics 8(21), 4603-4612

Korf U, Henjes F, Schmidt C et al. (2008) Antibody microarrays as an experimental platform for the analysis of signal transduction networks. Adv. Biochem. Eng. Biotechnol. 110, 153-175

Li S, Sack R, Vijmasi T et al. Antibody protein array analysis of the tear film cytokines. Optom.Vis. Sci 85(8), 653-660

Mace CR, Yadav AR , Miller BL. (2008) Investigation of non-nucleophilic additives for the reduction of morphological anomalies in protein arrays. Langmuir 24(22), 12754-12757

Melin J, Jarvius J, Larsson C, Soderberg O, Landegren U, Nilsson M. (2008) Ligation-based molecular tools for lab-on-a-chip devices. N. Biotechnol. 25(1), 42-48

Ozkumur E, Needham JW, Bergstein DA et al. (2008) Label-free and dynamic detection of biomolecular interactions for high-throughput microarray applications. Proc. Natl. Acad. Sci U.S.A 105(23), 7988-7992

Quintana FJ, Farez MF, Viglietta V et al. (2008) Antigen microarrays identify unique serum autoantibody signatures in clinical and pathologic subtypes of multiple sclerosis. Proc. Natl. Acad. Sci U.S.A 105(48), 18889-18894

Ramachandran N, Raphael JV, Hainsworth E et al. (2008) Next-generation high-density self-assembling functional protein arrays. Nat. Methods 5(6), 535-538

Roche S, Dauvilliers Y, Tiers L et al. (2008) Autoantibody profiling on high-density protein microarrays for biomarker discovery in the cerebrospinal fluid. J. Immunol. Methods 338(1-2), 75-78

Rolfs A, Montor WR, Yoon SS, et al. (2008) Production and sequence validation of a complete full length ORF collection for the pathogenic bacterium Vibrio cholerae. Proc. Natl. Acad. Sci. U. S. A. 105(11), 4364-4369

Schwenk JM, Gry M, Rimini R, Uhlen M, Nilsson P. (2008) Antibody suspension bead arrays within serum proteomics. J. Proteome Res. 7(8), 3168-3179

Wong LS, Thirlway J, Micklefield J. (2008) Direct site-selective covalent protein immobilization catalyzed by a phosphopantetheinyl transferase. J. Am. Chem. Soc. 130(37), 12456-12464

2007

Davies DH, Molina DM, Wrammert J et al. (2007) Proteome-wide analysis of the serological response to vaccinia and smallpox. Proteomics 7(10), 1678-1686

Eyles JE, Unal B, Hartley MG et al. (2007) Immunodominant Francisella tularensis antigens identified using proteome microarray. Proteomics 7(13), 2172-2183

Pilobello KT, Slawek DE, Mahal LK. (2007) A ratiometric lectin microarray approach to analysis of the dynamic mammalian glycome. Proc. Natl. Acad. Sci U.S.A 104(28), 11534-11539

Popescu SC, Popescu GV, Bachan S et al. (2007) Differential binding of calmodulin-related proteins to their targets revealed through high-density Arabidopsis protein microarrays. Proc. Natl. Acad .Sci U.S.A 104(11), 4730-4735

Salamat-Miller N, Fang J, Seidel CW, Assenov Y, Albrecht M, Middaugh CR. (2007) A network-based analysis of polyanion-binding proteins utilizing human protein arrays. J. Biol. Chem 282(14), 10153-10163

Salcius M, Michaud GA, Schweitzer B, Predki PF. (2007) Identification of small molecule targets on functional protein microarrays. Methods Mol Biol. 382, 239-248

Stoevesandt O, Köhler K, Wolf S, Andre T, Hummel W, Brock R. (2007) A network analysis of changes in molecular interactions in cellular signaling. Mol. Cell. Proteomics 6(3), 503 - 513

Zhao J, Patwa TH, Qiu W et al. (2007) Glycoprotein microarrays with multi-lectin detection: unique lectin binding patterns as a tool for classifying normal, chronic pancreatitis and pancreatic cancer sera. J. Proteome Res. 6(5), 1864-1874

2006

Angenendt P, Kreutzberger J, Glokler J, Hoheisel JD. (2006) Generation of high density protein microarrays by cell-free in situ expression of unpurified PCR products. Mol. Cell. Proteomics 5(9), 1658-1666

Chatterjee M, Draghici S, Tainsky MA. (2006) Immunotheranostics: breaking tolerance in immunotherapy using tumor autoantigens identified on protein microarrays. Curr. Opin. Drug Discov. Devel. 9(3), 380-385

Finnskog D, Jaras K, Ressine A et al. (2006) High-speed biomarker identification utilizing porous silicon nanovial arrays and MALDI-TOF mass spectrometry. Electrophoresis 27(5-6), 1093–1103

Ghazani AA, Lee JA, Klostranec J et al. (2006) High Throughput Quantification of Protein Expression of Cancer Antigens in Tissue Microarray Using Quantum Dot Nanocrystals. Nano Lett. 6 (12), 2881–2886

Gordus A , MacBeath G. (2006) Circumventing the problems caused by protein diversity in microarrays: implications for protein interaction networks. J.Am.Chem Soc. 128(42), 13668-13669

Ho SW, Jona G, Chen CT , Johnston M, Snyder M. (2006) Linking DNA-binding proteins to their recognition sequences by using protein microarrays. Proc. Natl. Acad. Sci U.S.A 103(26), 9940-9945

Kattah MG, Alemi GR, Thibault DL, Balboni I, Utz PJ. (2006) A new two-color Fab labeling method for autoantigen protein microarrays. Nat. Methods 3(9), 745-751

Khan F, He M, Taussig MJ. (2006) Double-hexahistidine tag with high-affinity binding for protein immobilization, purification, and detection on ni-nitrilotriacetic acid surfaces. Anal. Chem. 78(9), 3072-3079

Kung LA, Snyder M. (2006) Proteome chips for whole-organism assays. Nat Rev.Mol Cell Biol. 7(8), 617-622

Li Y, Yang HH, You QH, Zhuang ZX, Wang XR. (2006) Protein recognition via surface molecularly imprinted polymer nanowires. Anal. Chem. 78(1), 317-320

Sanchez-Carbayo M, Socci ND, Lozano JJ, Haab BB, Cordon-Cardo C (2006) Profiling bladder cancer using targeted antibody arrays. Am.J.Pathol. 168(1), 93-103

Steinhauer C, Wingren C, Khan F, He M, Taussig MJ, Borrebaeck CA. (2006) Improved affinity coupling for antibody microarrays: engineering of double-(His)6-tagged single framework recombinant antibody fragments. Proteomics 6(15), 4227-4234

Tao SC, Zhu H. (2006) Protein chip fabrication by capture of nascent polypeptides. Nat. Biotechnol. 24(10), 1253-1254

Tibes R, Qiu Y, Lu Y et al. (2006)Reverse phase protein array: validation of a novel proteomic technology and utility for analysis of primary leukemia specimens and hematopoietic stem cells. Mol. Cancer Ther. 5(10), 2512-2521

Wu P, Grainger DW. (2006) Comparison of hydroxylated print additives on antibody microarray performance. J. Proteome Res. 5(11), 2956-2965

2005

Bartling B, Hofmann HS, Boettger T et al. (2005) Comparative application of antibody and gene array for expression profiling in human squamous cell lung carcinoma. Lung Cancer 49(2), 145-154

Cha T, Guo A, Zhu XY. (2005) Enzymatic activity on a chip: the critical role of protein orientation. Proteomics 5(2), 416-419

Combaret V, Bergeron C, Brejon S et al (2005) Protein chip array profiling analysis of sera from neuroblastoma patients. Cancer Lett. 228(1-2), 91-96

Davies DH, Liang X, Hernandez JE et al. (2005) Profiling the humoral immune response to infection by using proteome microarrays: high-throughput vaccine and diagnostic antigen discovery. Proc. Natl. Acad. Sci U.S.A 102(3), 547-552

Davies DH, McCausland MM, Valdez C et al. (2005) Vaccinia virus H3L envelope protein is a major target of neutralizing antibodies in humans and elicits protection against lethal challenge in mice. J. Virol. 79(18), 11724-11733

Feilner T, Hultschig C, Lee J et al. (2005) High throughput identification of potential Arabidopsis mitogen-activated protein kinases substrates. Mol Cell Proteomics 4(10), 1558-1568

Funeriu DP, Eppinger J, Denizot L, Miyake M, Miyake J. (2005) Enzyme family-specific and activity-based screening of chemical libraries using enzyme microarrays. Nat. Biotechnol. 23(5), 622-627

Gavin IM, Kukhtin A, Glesne D, Schabacker D, Chandler DP (2005) Analysis of protein interaction and function with a 3-dimensional MALDI-MS protein array. Biotechniques 39, 99-107

Geho D, Lahar N, Gurnani P et al (2005) Pegylated, steptavidin-conjugated quantum dots are effective detection elements for reverse-phase protein microarrays. Bioconjug. Chem 16(3), 559-566

Guilleaume B, Buness A, Schmidt C et al (2005) Systematic comparison of surface coatings for protein microarrays. Proteomics. 5(18), 4705-4712

Hamelinck D, Zhou H, Li L et al (2005) Optimized normalization for antibody microarrays and application to serum-protein profiling. Mol Cell Proteomics 4(6), 773-784

Janzi M, Odling J, Pan-Hammarstrom Q et al (2005) Serum microarrays for large scale screening of protein levels. Mol. Cell. Proteomics 4(12), 1942-1947

Kim SH, Tamrazi A, Carlson KE, Katzenellenbogen JA. (2005) A proteomic microarray approach for exploring ligand-initiated nuclear hormone receptor pharmacology, receptor selectivity, and heterodimer functionality. Mol. Cell. Proteomics 4(3), 267-277

Kopf E, Shnitzer D, Zharhary D. (2005) Panorama Ab Microarray Cell Signaling kit: a unique tool for protein expression analysis. Proteomics 5(9), 2412-2416

Lee MY, Park CB, Dordick JS, Clark DS. (2005) Metabolizing enzyme toxicology assay chip (MetaChip) for high-throughput microscale toxicity analyses. Proc. Natl. Acad. Sci U.S.A 102(4), 983-987

Li B, Jiang L, Song Q et al. (2005) Protein microarray for profiling antibody responses to Yersinia pestis live vaccine. Infect. Immun. 73(6), 3734-3739

Lu DD, Chen SH, Zhang SM et al. (2005) Screening of specific antigens for SARS clinical diagnosis using a protein microarray. Analyst 130(4), 474-482

Ofir K, Berdichevsky Y, Benhar I et al. (2005) Versatile protein microarray based on carbohydrate-binding modules. Proteomics 5(7), 1806-1814

Poetz O, Ostendorp R, Brocks B, Schwenk JM, Stoll D, Joos TO, Templin MF. (2005) Protein microarrays for antibody profiling: specificity and affinity determination on a chip. Proteomics 5(9), 2402-2411

Ptacek J, Devgan G, Michaud G et al. (2005) Global analysis of protein phosphorylation in yeast. Nature 438(7068), 679-684

Sakanyan V. (2005) High-throughput and multiplexed protein array technology: protein-DNA and protein-protein interactions. J. Chromatogr. B Analyt. Technol. Biomed. Life Sci 815(1-2), 77-95

Unfricht DW, Colpitts SL, Fernandez SM, Lynes MA. (2005) Grating-coupled surface plasmon resonance: a cell and protein microarray platform. Proteomics 5(17), 4432-4442

Reviews

2008

He M. (2008) Cell-free protein synthesis: applications in proteomics and biotechnology. N. Biotechnol. 25(2-3), 126-232

He M, Stoevesandt O, Taussig MJ. (2008) In situ synthesis of protein arrays. Curr.Opin.Biotechnol. 19(1), 4-9

2007

2006

Cretich M, Damin F, Pirri G, Chiari M. (2006) Protein and peptide arrays: recent trends and new directions. Biomol. Eng 23(2-3), 77-88

2005

Bertone P, Snyder M. (2005) Advances in functional protein microarray technology. FEBS J. 272(21), 5400-5411

Gustafsdottir SM, Schallmeiner E, Fredrikkson S, et al. (2005) Proximity ligation assays for sensitive and specific protein analyses. Anal. Chem. 345(1), 2-9

Merkel JS, Michaud GA , Salcius M, Schweitzer B, Predki PF (2005) Functional protein microarrays: just how functional are they? Curr.Opin.Biotechnol 16(4), 447-452

Ramachandran N, Larson DN, Stark PR, Hainsworth E, LaBaer J. (2005) Emerging tools for real-time label-free detection of interactions on functional protein microarrays. FEBS J. 272(21), 5412-5425

Page last update July 2009