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Workshops 2003

New in vivo imaging modalities for Molecular Biology, Cell Biology and Physiology

Workshop organisers:
Bertrand Tavitian: INSERM, Orsay, France
Clemens Lowik: Department of Endocrinology, University Hospital Leiden, The Netherlands

This workshop has 4 main objectives :

  • to present recent breakthroughs in the domain of in vivo imaging and give to specialists and laboratory scientists from all disciplines the most precise information regarding the tools available for their specific research field.
  • to provide an overview of the lastest development tools in the field of physiology, cellular and molecular biology which can be easily integrated to the imaging technics. This will concern new tracers derived from combinatorial chemistry or genetic engineering, as well as animal models.
  • to present actual issues, such as gene therapy, drug development or developmental biology, which have or will benefit greatly from molecular imaging techniques.
  • to promote dicussions amongst laboratories of different backgrounds on the potential interaction between physics, chemistry and biology for biomedical research.

>> more information

Date and Venue: May 31st- June 4th: Roscoff, France.


Regulatory and functional RNAs: computational, genomic and structural approaches

Workshop organisers:
Elena Rivas: Washington U., St. Louis, USA.
Eric Westhof: Universitie Louis Pasteur, Strasbourg, France.

This workshop intends to bring together a group of theoreticians and computational scientists working on problems related to the computational analysis of functional and regulatory RNAs.
Some of the open problems in the field which will be discussed are:

  • RNA gene finding and genome annotation
  • RNA structure
  • Homology searches

>> more information

Date and Venue: July 27th- August 8th: Benasque Center for Science, Benasque, Spain.


Microarray data: untapped powers and hidden weaknesses

Workshop organisers:
Martin Kuiper: Flemish Institute of Biotechnology (VIB), Belgium.

Paul Van Hummelen: Flemish Institute of Biotechnology (VIB), Belgium.
Yves Moreau: Katholieke Universiteit Leuven, Belgium.

Integrated multidisciplinary research, involving a strong interaction between technology, statistics and biology, is vital both for supplementing genome data with functional genomics data, and to translate genomic data into practical applications. Such cooperation is essential to extend our knowledge of individual gene function and to be able to construct the genetic networks that make up the essential biological processes of life. Microarray technology is a typical example of what such multidisciplinary cooperation can deliver.

The purpose of this workshop is to enhance the skill-base in Europe for the implementation of transcription microarrays and to strengthen subsequent analysis of microarray data. The quantity and quality of functional genomics data is key to building knowledge of genes and gene networks. This workshop will help to disseminate new technological progress, protocols and standardisation issues.

>> more information

Date and Venue: Sept 8th - 9th: Faculty Club, Leuven, Belgium.


Data integration in functional genomics and proteomics: application to biological pathways

Workshop organisers:
Pierre-Alain Binz: Swiss Institute of Bioinformatics (SIB), Switzerland.
Paul van der Vet: Center for Telematics and Information Technology (CTIT), University of Twente, Netherlands.
Henning Hermjakob: European Bioinformatics Institute (EBI), Hinxton, UK
.

The workshop will bring together scientists and bioinformaticians, who are involved in major multidisciplinary projects. We will aim to understand the current issues related with the design and implementation of biological pathways databases.

Topics will include:

  • Current status of the use of experimental information to create biological pathways databases in existing consortia
  • Design, creation and formalisation of biological pathways databases
  • Relation and interoperability of such databases to each other and with other external databases (such as knowledgebases, protein sequence databases, protein families databases, genomic sequences databases, structures databases, functional information containing databases, etc.)

>> more information

Date and venue: September 22nd - 24th: Swiss Institute of Bioinformatics, Geneva, Switzerland.


Trends in Nucleic Acid based Biosensors

Workshops organisers:
Marco Mascini: University of Florence, Italy
Ulf Landegren: University of Uppsala, Sweden
Ettore Luzi: University of Florence, Italy
Maria Minunni: University of Florence, Italy

The objectives of this workshop are:

  • To bring together experts from biosensing and nucleic acid research areas for optimising the DNA or RNA biosensor tool
  • Progress in understanding immobilization of ssDNA and RNA to allow the design of analytical sensing surfaces that can be used for very rapid and quantitative determination of the extent of nucleic acid hybridization
  • Recent development on SELEX technology for the rapid production of aptamers with improved affinity and stability
  • Optimisation of the analytical biosensor for studying RNA-protein interactions

    >> more information

    Date and Venue: October 25 - 28th: Florence, Italy


Advanced data mining and visualisation approaches to systems biology.

Workshop organisers:
Francisco Azuaje: University of Ulster at Jordanstown, Northern
Ireland, UK.
Joaquin Dopazo: Spanish National Cancer Centre, Madrid, Spain.

The workshop will focus on two major themes.

  • Theme 1. Current challenges and opportunities in biological pattern discovery. It aims to address key limitations exhibited by existing data mining approaches to systems biology, and to discuss requirements for the development of an advanced generation of techniques and applications.
  • Theme 2. Current challenges and opportunities in biological information visualisation. It covers the problems of displaying data mining results, navigating and browsing biological databases, and representing information extraction/retrieval outcomes based on multiple information resources, with special emphasis on a systemic scale view.

>> more information

Date and Venue: November 13 - 15th: Ulster, Northern Ireland


RNAi: the technology to revolutionise functional genomic research: What are the limitations?

Workshop organisers:
Thomas F. Meyer: MPI for Infection Biology, Berlin
Thomas Rudel: MPI for Infection Biology, Berlin
Hans Prydz: Biotechnology Centre of Oslo, Oslo
Joachim W. Engels: Institut für Organische Chemie, Goethe
Universität Frankfurt am Main

  • The major aim of this workshop is to bring together researchers from different lines of RNA interference research in order to fathom the impact of the new developments on the practical aspects of the RNAi technology. Therefore it is important to learn about the newest findings on the basic mechanisms of RNAi and variations thereof found in different organisms as well as about novel applications in therapy. Further, we will encourage the participants to not only present their published, successful work but also unsuccessful approaches that might be very helpful for the planning of future research programmes.

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Date and Venue: November 20th-22nd, 2003: Berlin, Germany



SNPs analysis: tools and applications

Workshop organisers:
Javier Benítez: Human Genetic Department; Spanish National Cancer
Center (CNIO).
Mercedes Robledo: Human Genetic Department; CNIO.
Joaquin Dopazo: Bioinformatics Unit, CNIO.

The main purpose of this workshop is to analyze different methodological approaches in the study of SNPs, data analysis methods and evolution and diagnostic applications.

Objectives are:

  • To bring together European experts who are working in or have started working in the field of SNPs data analysis, favouring young researches.
  • to foster collaboration among European scientists working in this area.
  • to provide a forum for scientists to discuss the progress in this rapidly evolving field.
  • to establish a strong European collaborative network.

>> more information

Date and Venue: November 28th - 29th : Madrid, Spain.